Publications

@article{Filia24,

title = {Single-cell transcriptomic analysis of hematopoietic progenitor cells from patients with systemic lupus erythematosus reveals interferon-inducible reprogramming in early progenitors},

author = {Anastasia Filia and Ioannis Mitroulis and Catherine Loukogiannaki and Maria Grigoriou and Aggelos Banos and George Sentis and Stavroula Giannouli and Vassiliki Karali and Emmanouil Athanasiadis and Ioannis Kokkinopoulos and Dimitrios T. Boumpas},

url = {https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2024.1383358/full},

doi = {10.3389/fimmu.2024.1383358},

year  = {2024},

date = {2024-05-08},

journal = {Frontiers in Immunology},

volume = {15},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kritsi2024,

title = {Evaluation of the Quality Changes in Three Commercial Pastourma Samples during Refrigerated Storage Using Physicochemical, Microbiological, and Image Analyses Combined with Chemometrics},

author = {Eftichia Kritsi and Georgia Ladika and Natalia A. Stavropoulou and Marianna Oikonomakou and Alexandros-George Ioannou and Paris Christodoulou and Spyridon J. Konteles and Dionisis Cavouras and Vassilia J. Sinanoglou},

url = {https://pubmed.ncbi.nlm.nih.gov/38611323/},

doi = {10.3390/foods13071017},

year  = {2024},

date = {2024-03-26},

journal = {Foods},

volume = {13},

number = {1017},

issue = {7},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mavroidis2023,

title = {Comparison Between EPI DWI and PROPELLER DWI in Brain MR Imaging},

author = {Panayiotis Mavroidis and Eleonora Giankou and Maria Papaioannou and Violeta Roka and Aleksandra Tsikrika and Spiros Kostopoulos and Dimitrios Glotsos and Giorgos K. Sakkas and Efthimios Dardiotis and Dimitrios Chaniotis and Eftichia Kapsalaki and Eleftherios Lavdas},

url = {https://www.sciencedirect.com/science/article/pii/S0363018823001305?via%3Dihub},

doi = {10.1067/j.cpradiol.2023.08.015},

year  = {2024},

date = {2024-01-31},

urldate = {2023-08-27},

journal = {Current Problems in Diagnostic Radiology},

volume = {53},

issue = {1},

pages = {73-80},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ladika2024,

title = {On the Assessment of Strawberries’ Shelf-Life and Quality, Based on Image Analysis, Physicochemical Methods, and Chemometrics},

author = {Georgia Ladika and Irini F. Strati and Thalia Tsiaka and Dionisis Cavouras and Vassilia J. Sinanoglou},

url = {https://pubmed.ncbi.nlm.nih.gov/38254534/},

doi = {10.3390/foods13020234},

year  = {2024},

date = {2024-01-11},

urldate = {2024-01-11},

journal = {Foods},

volume = {13},

number = {234},

issue = {2},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Koudounas2023,

title = {An experimental platform for tomographic reconstruction of tissue images in brightfield microscopy},

author = {Panteleimon Koudounas and Efthymios Koniaris and Ioannis Manolis and Panteleimon Asvestas and Spiros Kostopoulos and Dionisis Cavouras and Dimitris Glotsos},

url = {https://www.mdpi.com/1424-8220/23/23/9344},

doi = {10.3390/s23239344},

year  = {2023},

date = {2023-11-23},

urldate = {2023-11-23},

journal = {Sensors},

volume = {23},

number = {9344},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kostopoulos2023,

title = {Radiomics Texture Analysis of Bone Marrow Alterations in MRI Knee Examinations},

author = {Spiros Kostopoulos and Nada Boci and Dionisis Cavouras and Antonios Tsagkalis and Maria Papaioannou and Alexandra Tsikrika and Dimitris Glotsos and Pantelis Asvestas and Eleftherios Lavdas},

url = {https://www.mdpi.com/2313-433X/9/11/252},

doi = {10.3390/jimaging9110252},

year  = {2023},

date = {2023-11-20},

urldate = {2023-11-20},

journal = {Journal of Imaging},

volume = {9},

number = {252},

issue = {11},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Voutyraki2023,

title = {Growth deregulation and interaction with host hemocytes contribute to tumor progression in a Drosophila brain tumor model},

author = {Chrysanthi Voutyraki and Alexandros Choromidis and Anastasia Meligkounaki and Nikolaos Andreas Vlachopoulos and Vasiliki Theodorou and Sofia Grammenoudi and Emmanouil Athanasiadis and Sara Monticelli and Angela Giangrande and Christos Delidakis and Evanthia Zacharioudaki},

url = {https://www.pnas.org/doi/full/10.1073/pnas.2221601120},

doi = {10.1073/pnas.222160112},

year  = {2023},

date = {2023-08-07},

urldate = {2023-08-07},

journal = {PNAS},

volume = {120},

number = {e2221601120},

issue = {33},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ouzounis2023b,

title = {A Robust Machine Learning Framework Built Upon Molecular Representations Predicts CYP450 Inhibition: Toward Precision in Drug Repurposing},

author = {Sotiris Ouzounis and Vasilis Panagiotopoulos and Vivi Bafiti and Panagiotis Zoumpoulakis and Dionisis Cavouras and Ioannis Kalatzis and Minos-Timotheos Matsoukas and Theodora Katsila},

url = {https://pubmed.ncbi.nlm.nih.gov/37406257/},

doi = {10.1089/omi.2023.0075},

year  = {2023},

date = {2023-07-04},

journal = {OMICS A Journal of Integrative Biology},

volume = {27},

issue = {7},

pages = {305-314},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tsiaka2023,

title = {Quality Assessment of Ground Coffee Samples from Greek Market Using Various Instrumental Analytical Methods, In Silico Studies and Chemometrics},

author = {Thalia Tsiaka and Eftichia Kritsi and Sotirios M. Bratakos and Georgios Sotiroudis and Panagiota Petridi and Ioanna Savva and Paris Christodoulou and Irini F. Strati and Panagiotis Zoumpoulakis and Dionisis Cavouras and Vassilia J. Sinanoglou},

doi = {10.3390/antiox12061184},

year  = {2023},

date = {2023-05-30},

journal = {Antioxidants},

volume = {12},

number = {1184},

issue = {6},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Coehlo2023,

title = {The COVID-19 Pandemic: How Technology Is Reshaping Public Health and Medicine},

author = {Luís Coelho and Dimitrios Glotsos and Sara Reis

},

url = {https://www.mdpi.com/2306-5354/10/5/611},

doi = {10.3390/bioengineering10050611},

year  = {2023},

date = {2023-05-01},

urldate = {2023-05-01},

journal = {Bioengineering},

volume = {10},

number = {611},

issue = {5},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sinanoglou2023,

title = {Quality Assessment of Banana Ripening Stages by Combining Analytical Methods and Image Analysis},

author = {Vassilia J. Sinanoglou and Thalia Tsiaka and Konstantinos Aouant and Elizabeth Mouka and Georgia Ladika and Eftichia Kritsi and Spyros J. Konteles and Alexandros-George Ioannou and Panagiotis Zoumpoulakis and Irini F. Strati and Dionisis Cavouras},

doi = {10.3390/app13063533},

year  = {2023},

date = {2023-03-10},

journal = {Applied Sciences},

volume = {13},

number = {3533},

issue = {6},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kritsi2023,

title = {Potential Health Benefits of Banana Phenolic Content during Ripening by Implementing Analytical and In Silico Techniques},

author = {Eftichia Kritsi and Thalia Tsiaka and Georgios Sotiroudis and Elizabeth Mouka and Konstantinos Aouant and Georgia Ladika and Panagiotis Zoumpoulakis and Dionisis Cavouras and Vassilia J. Sinanoglou},

url = {https://pubmed.ncbi.nlm.nih.gov/36836689/},

doi = {10.3390/life13020332},

year  = {2023},

date = {2023-01-22},

urldate = {2023-01-22},

journal = {Life},

volume = {13},

issue = {2},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ioannou2022,

title = {Highlighting the Potential of Attenuated Total Reflectance–Fourier Transform Infrared (ATR-FTIR) Spectroscopy to Characterize Honey Samples with Principal Component Analysis (PCA)},

author = {A. Ioannou and E. Kritsi and V. Sinanoglou and D. Cavouras and T. Tsiaka and D. Houhoula and P. Zoumpoulakis and I.F. ;Strati},

url = {https://www.tandfonline.com/doi/full/10.1080/00032719.2022.2103143},

doi = {10.1080/00032719.2022.2103143},

year  = {2023},

date = {2023-01-01},

journal = {Analytical Letters},

volume = {56},

issue = {5},

pages = {789-806},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Glotsos2022,

title = {The Biomedical Engineering Labor Market in Greece: A Survey Investigating Job Outlook, Satisfaction and Placement},

author = {D. Glotsos and S. Kostopoulos and P. Liaparinos and P. Asvestas and I Kalatzis},

url = {https://link.springer.com/article/10.1007/s43683-022-00088-x},

doi = {10.1007/s43683-022-00088-x},

year  = {2022},

date = {2022-11-11},

urldate = {2022-11-11},

journal = {Biomedical Engineering Education},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Fortis2022,

title = {Radiotherapy-Related Gene Signature in Prostate Cancer},

author = {Fortis P. Sotirios and Goulielmaki Maria and Aubert Nicolas and Batsaki Panagiota and Ouzounis Sotirios and Cavouras Dionisis and Marodon Gilles and Stokidis Savvas and Gritzapis D. Angelos and Baxevanis N. Constantin},

url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9599894/},

doi = {10.3390/cancers14205032},

year  = {2022},

date = {2022-10-22},

urldate = {2022-10-22},

journal = {Cancers},

volume = {14},

issue = {20},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bafiti2022,

title = {A 3-miRNA Signature Enables Risk Stratification in Glioblastoma Multiforme Patients with Different Clinical Outcomes},

author = {V. Bafiti and S. Ouzounis and C. Chalikiopoulou and E. Grigorakou and I.M. Grypari and G. Gregoriou and A. Theofanopoulos and V. Panagiotopoulos and E. Prodromidi and D. Cavouras and V. Zolota and D. Kardamakis and T. Katsila },

url = {https://www.mdpi.com/1718-7729/29/6/345},

doi = {10.3390/curroncol29060345},

year  = {2022},

date = {2022-06-16},

journal = {Current Oncology},

volume = {26},

issue = {9},

pages = {4315-4331},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Koudounas2022,

title = {Three-dimensional tissue volume generation in conventional brightfield microscopy},

author = {P. Koudounas and E. Koniaris and I. Manolis and P. Asvestas and S. Kostopoulos and D. Cavouras and D. Glotsos},

url = {https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/jemt.24141},

doi = {10.1002/jemt.24141},

year  = {2022},

date = {2022-05-05},

urldate = {2022-05-05},

journal = {Microscopy Research and Technique},

volume = {85},

issue = {8},

pages = {2913-2923},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Korda2022,

title = {Convolutional neural network propagation on electroencephalographic scalograms for detection of schizophrenia},

author = {A.I. Korda and E. Ventouras and P. Asvestas and M. Toumaian and G.K. Matsopoulos and N.Smyrnis},

url = {https://www.sciencedirect.com/science/article/pii/S1388245722002401?via%3Dihub},

doi = {10.1016/j.clinph.2022.04.010},

year  = {2022},

date = {2022-04-01},

journal = {Clinical Neurophysiology},

volume = {139},

pages = {90-105},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Fysikopoulos2022,

title = {β-eye: A benchtop system for in vivo molecular screening of labeled compounds},

author = {E. Fysikopoulos and M. Rouchota and M.Georgiou and C.Sfyris and N.Cheimarios and S.Sarpaki and S.Kostopoulos and D. Glotsos and B. Larimer and C. Hunter and S. Lapi and H. Houson and A.V.F. Massicano and A. Sorace and E. Lamprou and G. Loudos},

url = {https://www.sciencedirect.com/science/article/pii/S0969804321004279?via%3Dihub},

doi = {10.1016/j.apradiso.2021.110034},

year  = {2022},

date = {2022-01-01},

journal = {Applied Radiation and Isotopes},

volume = {180},

number = {110034},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Fysikopoulos2021,

title = {Optical to planar x-ray mouse image mapping in preclinical nuclear medicine using conditional adversarial networks},

author = {E. Fysikopoulos and M. Rouchota and V. Eleftheriadis and C-A. Gatsiou and I. Pilatis and S. Sarpaki and G. Loudos and S. Kostopoulos and D. Glotsos},

url = {https://www.mdpi.com/2313-433X/7/12/262},

doi = {10.3390/jimaging7120262},

year  = {2021},

date = {2021-12-03},

urldate = {2021-12-03},

journal = {Journal of Imaging},

volume = {7},

number = {262},

issue = {12},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Liaskos2021,

title = {Vertebrae, IVD and spinal canal boundary extraction on MRI, utilizing CT-trained active shape models},

author = {M. Liaskos and M. A. Savelonas and P. A. Asvestas and D. Papageorgiou and G.K. Matsopoulos},

url = {https://link.springer.com/article/10.1007/s11548-021-02502-1},

doi = {10.1007/s11548-021-02502-1},

year  = {2021},

date = {2021-10-13},

journal = {International Journal of Computer Assisted Radiology and Surgery},

volume = {16},

issue = {12},

pages = {2201-2214},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lavdas2021,

title = {Thorax artifacts in CT – Air embolism or other causes?},

author = {E. Lavdas and M. Papaioannou and A. Tsikrika and E. Pappas and G.K. Sakkas and V. Roka and S. Kostopoulos and P. Mavroidis},

url = {https://ijrr.com/article-1-3785-en.html},

doi = {10.18869/acadpub.ijrr.19.3.653},

year  = {2021},

date = {2021-07-01},

urldate = {2021-07-01},

journal = {International Journal of Radiation Research},

volume = {19},

issue = {3},

pages = {653-659},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Theodosi2021b,

title = {Employing machine learning and microscopy images of AIB1-stained biopsy material to assess the 5-year survival of patients with colorectal cancer},

author = {A. Theodosi and S. Ouzounis and S. Kostopoulos and D. Glotsos and I. Kalatzis and P. Asvestas and V. Tzelepi and P. Ravazoula and D. Cavouras and G. Sakelaropoulos},

url = {https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/jemt.23797},

doi = {10.1002/jemt.23797},

year  = {2021},

date = {2021-04-30},

journal = {Microscopy Research and Technique},

volume = {84},

issue = {10},

pages = {2421-2433},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Theodosi2021,

title = {Design of a hybrid Deep Learning System for discriminating between low and high-grade colorectal cancer lesions, using microscopy images of IHC stained for AIB1 expression biopsy material},

author = {A. Theodosi and S. Ouzounis and S. Kostopoulos and D. Glotsos and I. Kalatzis and V. Tzelepi and P. Ravazoula and P. Asvestas and D. Cavouras and G. Sakelaropoulos},

url = {https://link.springer.com/article/10.1007%2Fs00138-021-01184-8},

doi = {https://doi.org/10.1007/s00138-021-01184-8},

year  = {2021},

date = {2021-03-14},

journal = {Machine Vision and Applications},

volume = {32},

number = {58},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Konstantinou2020,

title = {Assessment of HPV Risk Type in H&E-stained Biopsy Specimens of the Cervix by Microscopy Image Analysis},

author = {C. Konstantinou and S. Kostopoulos and D. Glotsos and I. Kalatzis and P. Asvestas and P. Ravazoula and G. Michail and D. Cavouras and G. Sakellaropoulos},

url = {https://pubmed.ncbi.nlm.nih.gov/31876603/},

doi = {10.1097/PAI.0000000000000823},

year  = {2020},

date = {2020-10-01},

journal = {Applied Immunohistochemistry & Molecular Morphology},

volume = {28},

number = {9},

pages = {702-710},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Liaskos2020,

title = {Bimodal CT/MRI-based segmentation method for intervertebral disc boundary extraction},

author = {M. Liaskos and M.A. Savelonas and P. A. Asvestas and M.G. Lykissas and G.K. Matsopoulos},

url = {https://www.mdpi.com/2078-2489/11/9/448},

doi = {10.3390/info11090448},

year  = {2020},

date = {2020-09-15},

journal = {Information (Switzerland)},

volume = {11},

number = {448},

issue = {9},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kakkos2020,

title = {A condition-independent framework for the classification of error-related brain activity},

author = {I Kakkos and E M Ventouras and P A Asvestas and I S Karanasiou and G K Matsopoulos},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85077687798&doi=10.1007%2fs11517-019-02116-5&partnerID=40&md5=afe08e9148fba88b1618491ec47d8800},

doi = {10.1007/s11517-019-02116-5},

year  = {2020},

date = {2020-01-01},

journal = {Medical and Biological Engineering and Computing},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Theodosi2019749,

title = {Correlating Changes in the Epithelial Gland Tissue with Advancing Colorectal Cancer Histologic Grade, Using IHC Stained for AIB1 Expression Biopsy Material},

author = {A Theodosi and D Glotsos and S Kostopoulos and I Kalatzis and V Tzelepi and P Ravazoula and P Asvestas and D Cavouras and G Sakellaropoulos},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85052831214&doi=10.1097%2fPAI.0000000000000691&partnerID=40&md5=f2f1f6969e71931d952e064cf91ef4cb},

doi = {10.1097/PAI.0000000000000691},

year  = {2019},

date = {2019-01-01},

journal = {Applied Immunohistochemistry and Molecular Morphology},

volume = {27},

number = {10},

pages = {749-757},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Konstandinou2019,

title = {GPU-enabled design of an adaptable pattern recognition system for discriminating squamous intraepithelial lesions of the cervix},

author = {C Konstandinou and S Kostopoulos and D Glotsos and D Pappa and P Ravazoula and G Michail and I Kalatzis and P Asvestas and E Lavdas and D Cavouras and G Sakellaropoulos},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85075744107&doi=10.1515%2fbmt-2019-0040&partnerID=40&md5=314d57d9051190a7fd43620b5e987fd7},

doi = {10.1515/bmt-2019-0040},

year  = {2019},

date = {2019-01-01},

journal = {Biomedizinische Technik},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Liaskos2019301,

title = {Detection of retinal pigment epithelium detachment from OCT images using multiscale Gaussian filtering},

author = {M Liaskos and P A Asvestas and G K Matsopoulos and A Charonis and V Anastassopoulos},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85066309847&doi=10.3233%2fTHC-181501&partnerID=40&md5=c1f1cbae0b5506f1802292668dc42304},

doi = {10.3233/THC-181501},

year  = {2019},

date = {2019-01-01},

journal = {Technology and Health Care},

volume = {27},

number = {3},

pages = {301-316},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Konstandinou2018,

title = {Multifeature Quantification of Nuclear Properties from Images of H&E-Stained Biopsy Material for Investigating Changes in Nuclear Structure with Advancing CIN Grade},

author = {C Konstandinou and D Glotsos and S Kostopoulos and I Kalatzis and P Ravazoula and G Michail and E Lavdas and D Cavouras and G Sakellaropoulos},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85050190220&doi=10.1155%2f2018%2f6358189&partnerID=40&md5=eefc52036c70018d6f237840319d841d},

doi = {10.1155/2018/6358189},

year  = {2018},

date = {2018-01-01},

journal = {Journal of Healthcare Engineering},

volume = {2018},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Korda201810,

title = {Automatic identification of eye movements using the largest lyapunov exponent},

author = {A I Korda and P A Asvestas and G K Matsopoulos and E M Ventouras and N Smyrnis},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85033473940&doi=10.1016%2fj.bspc.2017.11.004&partnerID=40&md5=7170691be338ad93446569829b5758d4},

doi = {10.1016/j.bspc.2017.11.004},

year  = {2018},

date = {2018-01-01},

journal = {Biomedical Signal Processing and Control},

volume = {41},

pages = {10-20},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Glotsos2018177,

title = {Image quilting and wavelet fusion for creation of synthetic microscopy nuclei images},

author = {D Glotsos and S Kostopoulos and P Ravazoula and D Cavouras},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85047252085&doi=10.1016%2fj.cmpb.2018.05.023&partnerID=40&md5=2b2f0c62b4748ca3f0d177f74667f51d},

doi = {10.1016/j.cmpb.2018.05.023},

year  = {2018},

date = {2018-01-01},

journal = {Computer Methods and Programs in Biomedicine},

volume = {162},

pages = {177-186},

keywords = {},

pubstate = {published},

tppubtype = {article}

}